اخبار و رویدادها

بازگشت به صفحه کامل

Links

Links


 

 

fMRI Analysis Softwares

FSL (FMRIB Software Library)
SPM (Statistical Parametric Mapping)
FreeSurfer
BrainVoyager
REST (REsting-State fMRI Data Analysis Toolkit)
AFNI (Analysis of Functional NeuroImages)
Connectome Workbench

 


 

 

FSL (FMRIB Software Library)

 

Description: FSL is a comprehensive library of analysis tools for fMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. FSL runs on Apple and PCs (Linux and Windows (Virtual machine)), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).
Link: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
Last version: 5.0
Release date: Sep 2012

 


 

 

SPM (Statistical Parametric Mapping)

 

Description: Statistical Parametric Mapping refers to a MATLAB Toolbox, to construction and assessment of spatially extended statistical processes used to test hypotheses about functional imaging data. These ideas have been instantiated in software that is called SPM. The SPM software package has been designed for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG.
Link: http://www.fil.ion.ucl.ac.uk/spm/
Last version:8.0
Release date:Apr 2009

 


 

 

FreeSurfer

 

Description: FreeSurfer is a brain imaging software package developed by the Athinoula A. Martinos Center for Biomedical Imaging at Massachusetts General Hospital for analyzing MRI scan data. It is an important tool in functional brain mapping and facilitates the visualization of the functional regions of the highly-folded cerebral cortex. FreeSurfer includes tools for the reconstruction of topologically correct and geometrically accurate models of both the gray/white and pial surfaces, for measuring cortical thickness, surface area and folding, and for computing inter-subject registration based on the pattern of cortical folds. In addition, an automated labeling of 35 non-cortical regions is included in the package. FreeSurfer runs on Mac OS and Linux.
Link: http://freesurfer.net/
Last version:5.3.0
Release date:May 2013

 


 

 

BrainVoyager

 

Description: BrainVoyager QX is a powerful neuroimaging software package. It started as a tool for the analysis of anatomical and functional MRI data sets but has evolved over the years into a multi-modal analysis tool for fMRI, DTI, TMS, EEG and MEG data. The software is highly optimized and user friendly running on all major computer platforms including Windows (XP/Vista/7), Linux (i.e. Ubuntu, SUSE, Fedora) and Mac OS X (10.4 or higher including Snow Leopard). Besides having fun with the rotatable 3D models, the program contains information about the major lobes, gyri, sulci and Brodmann areas of the cerebral cortex.
Link: http://www.brainvoyager.com/
Last version: 2.8.0
Release date: June 2013

 


 

 

 

REST (REsting-State fMRI Data Analysis Toolkit)

 

Description: Resting-State fMRI Data Analysis Toolkit (REST) is a MATLAB Toolbox which provides an easy-working environment to perform various resting-state analysis. Using this toolkit, you can calculate Regional Homogeneity (ReHo), Amplitude of Low-Frequency Fluctuation (ALFF), Fractional ALFF (fALFF), Functional Connectivity (FC), and etc. It is also one of the required Toolboxes for Data Processing Assistant for Resting-State fMRI (DPARSF) software.
Link: http://restfmri.net
Last version: 1.8.0
Release date: May 2012

 


 

 

AFNI (Analysis of Functional NeuroImages)

 

Description: AFNI is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script. AFNI runs under many Unix-like operating systems and Mac OS X.
Link: http://restfmri.net
Last version: 10.8.0
Release date: Feb 2014

 


 

 

Connectome Workbench

 

Description: Connectome Workbench is a brain visualization, analysis and discovery tool for fMRI and dMRI brain imaging data, including functional and structural connectivity data generated by the Human Connectome Project. The software package includes wb_command, a command-line program for performing a variety of analytical tasks for volume, surface, and CIFTI gray-ordinates data. Connectome Workbench runs under many Unix-like operating systems, Mac OS X and Windows.
Link: http://www.humanconnectome.org
Last version: Beta 0.83
Release date: Aug 2013

 

 

fMRI Analysis Softwares

FSL (FMRIB Software Library)
SPM (Statistical Parametric Mapping)
FreeSurfer
BrainVoyager
REST (REsting-State fMRI Data Analysis Toolkit)
AFNI (Analysis of Functional NeuroImages)
Connectome Workbench

 


 

 

FSL (FMRIB Software Library)

 

Description: FSL is a comprehensive library of analysis tools for fMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. FSL runs on Apple and PCs (Linux and Windows (Virtual machine)), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).
Link: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/
Last version: 5.0
Release date: Sep 2012

 


 

 

SPM (Statistical Parametric Mapping)

 

Description: Statistical Parametric Mapping refers to a MATLAB Toolbox, to construction and assessment of spatially extended statistical processes used to test hypotheses about functional imaging data. These ideas have been instantiated in software that is called SPM. The SPM software package has been designed for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG.
Link: http://www.fil.ion.ucl.ac.uk/spm/
Last version:8.0
Release date:Apr 2009

 


 

 

FreeSurfer

 

Description: FreeSurfer is a brain imaging software package developed by the Athinoula A. Martinos Center for Biomedical Imaging at Massachusetts General Hospital for analyzing MRI scan data. It is an important tool in functional brain mapping and facilitates the visualization of the functional regions of the highly-folded cerebral cortex. FreeSurfer includes tools for the reconstruction of topologically correct and geometrically accurate models of both the gray/white and pial surfaces, for measuring cortical thickness, surface area and folding, and for computing inter-subject registration based on the pattern of cortical folds. In addition, an automated labeling of 35 non-cortical regions is included in the package. FreeSurfer runs on Mac OS and Linux.
Link: http://freesurfer.net/
Last version:5.3.0
Release date:May 2013

 


 

 

BrainVoyager

 

Description: BrainVoyager QX is a powerful neuroimaging software package. It started as a tool for the analysis of anatomical and functional MRI data sets but has evolved over the years into a multi-modal analysis tool for fMRI, DTI, TMS, EEG and MEG data. The software is highly optimized and user friendly running on all major computer platforms including Windows (XP/Vista/7), Linux (i.e. Ubuntu, SUSE, Fedora) and Mac OS X (10.4 or higher including Snow Leopard). Besides having fun with the rotatable 3D models, the program contains information about the major lobes, gyri, sulci and Brodmann areas of the cerebral cortex.
Link: http://www.brainvoyager.com/
Last version: 2.8.0
Release date: June 2013

 


 

 

 

REST (REsting-State fMRI Data Analysis Toolkit)

 

Description: Resting-State fMRI Data Analysis Toolkit (REST) is a MATLAB Toolbox which provides an easy-working environment to perform various resting-state analysis. Using this toolkit, you can calculate Regional Homogeneity (ReHo), Amplitude of Low-Frequency Fluctuation (ALFF), Fractional ALFF (fALFF), Functional Connectivity (FC), and etc. It is also one of the required Toolboxes for Data Processing Assistant for Resting-State fMRI (DPARSF) software.
Link: http://restfmri.net
Last version: 1.8.0
Release date: May 2012

 


 

 

AFNI (Analysis of Functional NeuroImages)

 

Description: AFNI is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script. AFNI runs under many Unix-like operating systems and Mac OS X.
Link: http://restfmri.net
Last version: 10.8.0
Release date: Feb 2014

 


 

 

Connectome Workbench

 

Description: Connectome Workbench is a brain visualization, analysis and discovery tool for fMRI and dMRI brain imaging data, including functional and structural connectivity data generated by the Human Connectome Project. The software package includes wb_command, a command-line program for performing a variety of analytical tasks for volume, surface, and CIFTI gray-ordinates data. Connectome Workbench runs under many Unix-like operating systems, Mac OS X and Windows.
Link: http://www.humanconnectome.org
Last version: Beta 0.83
Release date: Aug 2013

 
آدرس کوتاه :